Stacey D. Wetmore: search on Z-Library

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1

Remarkably Strong T-Shaped Interactions between Aromatic Amino Acids and Adenine: Their Increase upon Nucleobase Methylation and a Comparison to Stacking

Rutledge, Lesley R., Wetmore, Stacey D.

Journal:

Journal of Chemical Theory and Computation

Year:

2008

Language:

english

File:

PDF, 1.73 MB

english, 2008

2

The assessment of density functionals for DNA–protein stacked and T-shaped complexes

Rutledge, Lesley R., Wetmore, Stacey D.

Journal:

Canadian Journal of Chemistry

Year:

2010

File:

PDF, 1.40 MB

2010

3

Noncovalent Interactions Involving Histidine: The Effect of Charge on π−π Stacking and T-Shaped Interactions with the DNA Nucleobases

Churchill, Cassandra D. M., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 4.07 MB

english, 2009

4

Evidence for Stabilization of DNA/RNA−Protein Complexes Arising from Nucleobase−Amino Acid Stacking and T-Shaped Interactions

Rutledge, Lesley R., Durst, Holly F., Wetmore, Stacey D.

Journal:

Journal of Chemical Theory and Computation

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

5

Evaluating the Substrate Selectivity of Alkyladenine DNA Glycosylase: The Synergistic Interplay of Active Site Flexibility and Water Reorganization

Lenz, Stefan A. P., Wetmore, Stacey D.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.53 MB

english, 2016

6

Effects of Extending the Computational Model on DNA–Protein T-shaped Interactions: The Case of Adenine–Histidine Dimers

Rutledge, Lesley R., Navarro-Whyte, Lex, Peterson, Terri L., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry A

Year:

2011

Language:

english

File:

PDF, 3.16 MB

english, 2011

7

The Hydrogen Bonding Properties of Cytosine: A Computational Study of Cytosine Complexed with Hydrogen Fluoride, Water, and Ammonia

Hunter, Ken C., Rutledge, Lesley R., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry A

Year:

2005

Language:

english

File:

PDF, 221 KB

english, 2005

8

C 8 -Heteroaryl-2′-deoxyguanosine Adducts as Conformational Fluorescent Probes in the Nar I Recognition Sequence

Rankin, Katherine M., Sproviero, Michael, Rankin, Keegan, Sharma, Purshotam, Wetmore, Stacey D., Manderville, Richard A.

Journal:

Journal of Organic Chemistry

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

9

Designing an Appropriate Computational Model for DNA Nucleoside Hydrolysis: A Case Study of 2′-Deoxyuridine

Przybylski, Jennifer L., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 3.69 MB

english, 2009

10

Enhancing Bulge Stabilization through Linear Extension of C8-Aryl-Guanine Adducts to Promote Polymerase Blockage or Strand Realignment to Produce a C:C Mismatch

Sproviero, Michael, Verwey, Anne M. R., Witham, Aaron A., Manderville, Richard A., Sharma, Purshotam, Wetmore, Stacey D.

Journal:

Chemical Research in Toxicology

Year:

2015

Language:

english

File:

PDF, 3.69 MB

english, 2015

11

Combining crystallographic and quantum chemical data to understand DNA-protein π-interactions in nature

Wilson, Katie A., Wetmore, Stacey D.

Journal:

Structural Chemistry

Year:

2017

Language:

english

File:

PDF, 1.03 MB

english, 2017

12

Modeling the Dissociative Hydrolysis of the Natural DNA Nucleosides

Przybylski, Jennifer L., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 3.48 MB

english, 2010

13

Sodium Dodecyl sulfate Micellar Aggregation Numbers in the Presence of Cyclodextrins

Jobe, David J., Reinsborough, Vincent C., Wetmore, Stacey D.

Journal:

Year:

1995

Language:

english

File:

PDF, 466 KB

english, 1995

14

A Density-Functional Theory Investigation of the Radiation Products of l- α - Alanine

Ban, Fuqiang, Wetmore, Stacey D., Boyd, Russell J.

Journal:

Journal of Physical Chemistry A

Year:

1999

Language:

english

File:

PDF, 75 KB

english, 1999

15

Front Cover: Can Cyanuric Acid and 2,4,6-Triaminopyrimidine Containing Ribonucleosides be Components of Prebiotic RNA? Insights from QM Calculations and MD Simulations (ChemPhysChem 11/2019)

Kaur, Sarabjeet, Sharma, Purshotam, Wetmore, Stacey D.

Journal:

Year:

2019

File:

PDF, 351 KB

2019

16

Comparison of Experimental and Calculated Hyperfine Coupling Constants. Which Radicals Are Formed in Irradiated Guanine?

Wetmore, Stacey D., Boyd, Russell J., Eriksson, Leif A.

Journal:

Journal of Physical Chemistry B

Year:

1998

Language:

english

File:

PDF, 88 KB

english, 1998

17

A Preliminary Investigation of the Additivity of π−π or π + −π Stacking and T-Shaped Interactions between Natural or Damaged DNA Nucleobases and Histidine

Rutledge, Lesley R., Churchill, Cassandra D. M., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 1.22 MB

english, 2010

18

Conformational Flexibility of C8-Phenoxylguanine Adducts in Deoxydinucleoside Monophosphates

Millen, Andrea L., Kamenz, Breanne L., Leavens, Fern M. V., Manderville, Richard A., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 2.04 MB

english, 2011

19

The calculation of accurate [sup 17]O hyperfine coupling constants in the hydroxyl radical: A difficult problem for current quantum chemical methods

Wetmore, Stacey D., Eriksson, Leif A., Boyd, Russell J.

Journal:

The Journal of Chemical Physics

Year:

1998

Language:

english

File:

PDF, 391 KB

english, 1998

20

Intramolecular Hydrogen Bond-Controlled Prolyl Amide Isomerization in Glucosyl 3′(S)-Hydroxy-5′-hydroxymethylproline Hybrids: Influence of a C-5′-Hydroxymethyl Substituent on the Thermodynamics and Kinetics of Prolyl Amide Cis/Trans Isomerization

Zhang, Kaidong, Teklebrhan, Robel B., Schreckenbach, G., Wetmore, Stacey, Schweizer, Frank

Journal:

Journal of Organic Chemistry

Year:

2009

Language:

english

File:

PDF, 469 KB

english, 2009

21

Influence of Chlorine Substitution on the Hydrolytic Stability of Biaryl Ether Nucleoside Adducts Produced by Phenolic Toxins

Kuska, Michael S., Majdi Yazdi, Mohadeseh, Witham, Aaron A., Dahlmann, Heidi A., Sturla, Shana J., Wetmore, Stacey D., Manderville, Richard A.

Journal:

Journal of Organic Chemistry

Year:

2013

Language:

english

File:

PDF, 512 KB

english, 2013

22

A combined quantum mechanics and molecular dynamics study of small Jahn–Teller distorted hydrocarbons: Another difficult test for density-functional theory

Wetmore, Stacey D., Boyd, Russell J., Eriksson, Leif A., Laaksonen, Aatto

Journal:

The Journal of Chemical Physics

Year:

1999

Language:

english

File:

PDF, 469 KB

english, 1999

23

How Do Size-Expanded DNA Nucleobases Enhance Duplex Stability? Computational Analysis of the Hydrogen-Bonding and Stacking Ability of xDNA Bases

McConnell, Tom L., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

24

Standard Role for a Conserved Aspartate or More Direct Involvement in Deglycosylation? An ONIOM and MD Investigation of Adenine–DNA Glycosylase

Kellie, Jennifer L., Wilson, Katie A., Wetmore, Stacey D.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.30 MB

english, 2013

25

The Pliocene–Quaternary Buffalo Valley volcanic field, Nevada: Post-extension, intraplate magmatism in the north-central Great Basin, USA

Cousens, Brian, Wetmore, Stacey, Henry, Christopher D.

Journal:

Journal of Volcanology and Geothermal Research

Year:

2013

Language:

english

File:

PDF, 3.30 MB

english, 2013

26

Effects of Nucleophile, Oxidative Damage, and Nucleobase Orientation on the Glycosidic Bond Cleavage in Deoxyguanosine

Shim, Eun Jung, Przybylski, Jennifer L., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 2.08 MB

english, 2010

27

Effects of the biological backbone on DNA–protein stacking interactions

Churchill, Cassandra D. M., Navarro-Whyte, Lex, Rutledge, Lesley R., Wetmore, Stacey D.

Journal:

Physical Chemistry Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

28

Influence of the Linkage Type and Functional Groups in the Carcinogenic Moiety on the Conformational Preferences of Damaged DNA: Structural and Energetic Characterization of Carbon- and Oxygen-Linked C 8 -Phenolic-Guanine Adducts

Sharma, Purshotam, Majdi Yazdi, Mohadeseh, Merriman, Ashlyn, Manderville, Richard A., Wetmore, Stacey D.

Journal:

Chemical Research in Toxicology

Year:

2015

Language:

english

File:

PDF, 2.32 MB

english, 2015

29

Solid-State Structure of Protonated Ketones and Aldehydes

Gerken, Michael, Wetmore, Stacey D., Stuart, Daniel

Journal:

Angewandte Chemie

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

30

Quantum Chemical Studies of the Structure and Stability of N-Methylated DNA Nucleobase Dimers: Insights into the Mutagenic Base Pairing of Damaged DNA

Felske, Lindey R., Lenz, Stefan A. P., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry A

Year:

2017

Language:

english

File:

PDF, 3.77 MB

english, 2017

31

Syntheses, Characterization, and Computational Study of AsF5 Adducts with Ketones

Stuart, Daniel, Wetmore, Stacey D., Gerken, Michael

Journal:

Journal of Fluorine Chemistry

Year:

2019

File:

PDF, 876 KB

2019

32

Effects of the biological backbone on stacking interactions at DNA–protein interfaces: the interplay between the backbone⋯π and π⋯π components

Churchill, Cassandra D. M., Rutledge, Lesley R., Wetmore, Stacey D.

Journal:

Physical Chemistry Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

33

Adenine versus guanine DNA adducts of aristolochic acids: role of the carcinogen–purine linkage in the differential global genomic repair propensity

Kathuria, Preetleen, Sharma, Purshotam, Wetmore, Stacey D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

34

Hydrolytic Glycosidic Bond Cleavage in RNA Nucleosides: Effects of the 2′-Hydroxy Group and Acid–Base Catalysis

Lenz, Stefan A. P., Kohout, Johnathan D., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 3.01 MB

english, 2016

35

Igneous rocks in the Fish Creek Mountains and environs, Battle Mountain area, north-central Nevada: A microcosm of Cenozoic igneous activity in the northern Great Basin, Basin and Range Province, USA

Cousens, Brian L., Henry, Christopher D., Stevens, Christopher, Varve, Susan, John, David A., Wetmore, Stacey

Journal:

Earth-Science Reviews

Year:

2019

File:

PDF, 28.28 MB

2019

36

Computational comparison of the stacking interactions between the aromatic amino acids and the natural or (cationic) methylated nucleobases

Rutledge, Lesley R., Durst, Holly F., Wetmore, Stacey D.

Journal:

Physical Chemistry Chemical Physics

Year:

2008

Language:

english

File:

PDF, 1.61 MB

english, 2008

37

Modeling the Chemical Step Utilized by Human Alkyladenine DNA Glycosylase: A Concerted Mechanism Aids in Selectively Excising Damaged Purines

Rutledge, Lesley R., Wetmore, Stacey D.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 4.22 MB

english, 2011

38

Environmental Effects on the Enhancement in Natural and Damaged DNA Nucleobase Acidity Because of Discrete Hydrogen-Bonding Interactions

Hunter, Ken C., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry A

Year:

2007

Language:

english

File:

PDF, 131 KB

english, 2007

39

yDNA versus yyDNA pyrimidines: computational analysis of the effects of unidirectional ring expansion on the preferred sugar–base orientation, hydrogen-bonding interactions and stacking abilities

Sharma, Purshotam, Lait, Linda A., Wetmore, Stacey D.

Journal:

Physical Chemistry Chemical Physics

Year:

2013

Language:

english

File:

PDF, 2.42 MB

english, 2013

40

Chlorine substitution promotes phenyl radical loss from C8-phenoxy-2′-deoxyguanosine adducts: implications for biomarker identification from chlorophenol exposure

Witham, Aaron A., Sharma, Purshotam, Wetmore, Stacey D., Gabryelski, Wojciech, Manderville, Richard A.

Journal:

Journal of Mass Spectrometry

Year:

2015

Language:

english

File:

PDF, 692 KB

english, 2015

41

The properties of DNA C4′-centered sugar radicals: the importance of the computational model

Kali D. Parr, Stacey D. Wetmore

Journal:

Chemical Physics Letters

Year:

2004

Language:

english

File:

PDF, 214 KB

english, 2004

42

How Flexible Are Fleximer Nucleobases? A Computational Study

Bardon, Alma B., Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry A

Year:

2005

Language:

english

File:

PDF, 213 KB

english, 2005

43

Conformational Study of the Hydroxyproline–O–Glycosidic Linkage: Sugar–Peptide Orientation and Prolyl Amide Isomerization in (α/β)–Galactosylated 4( R / S )–Hydroxyproline

Naziga, Emmanuel B., Schweizer, Frank, Wetmore, Stacey D.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.43 MB

english, 2012

44

C8-linked bulky guanosine DNA adducts: experimental and computational insights into adduct conformational preferences and resulting mutagenicity

Millen, Andrea L, Sharma, Purshotam, Wetmore, Stacey D

Journal:

Future Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

45

Molecular Modeling of the Major DNA Adduct Formed from the Food Mutagen Ochratoxin A in Nar I 2-base Deletion Duplexes: Impact of Sequence Context and Adduct Ionization on Conformational Preference and Mutagenicity

Kathuria, Preetleen, Sharma, Purshotam, Manderville, Richard A., Wetmore, Stacey D

Journal:

Chemical Research in Toxicology

Year:

2017

Language:

english

File:

PDF, 946 KB

english, 2017

46

Enzyme Catalysis of 1,2-Amino Shifts: The Cooperative Action of B 6 , B 12 , and Aminomutases

Wetmore, Stacey D., Smith, David M., Radom, Leo

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 143 KB

english, 2001

47

Concerning the Hydrolytic Stability of 8-Aryl-2′-deoxyguanosine Nucleoside Adducts: Implications for Abasic Site Formation at Physiological pH

Schlitt, Katherine M., Sun, Ke-wen M., Paugh, Robert J., Millen, Andrea L., Navarro-Whyte, Lex, Wetmore, Stacey D., Manderville, Richard A.

Journal:

Journal of Organic Chemistry

Year:

2009

Language:

english

File:

PDF, 1.95 MB

english, 2009

48

An indole-linked C8-deoxyguanosine nucleoside acts as a fluorescent reporter of Watson–Crick versus Hoogsteen base pairing

Schlitt, Katherine M., Millen, Andrea L., Wetmore, Stacey D., Manderville, Richard A.

Journal:

Organic & Biomolecular Chemistry

Year:

2011

Language:

english

File:

PDF, 502 KB

english, 2011

49

Conformational Preferences of DNA following Damage by Aristolochic Acids: Structural and Energetic Insights into the Different Mutagenic Potential of the ALI and ALII-N 6 -dA Adducts

Kathuria, Preetleen, Sharma, Purshotam, Abendong, Minette N., Wetmore, Stacey D.

Journal:

Year:

2015

Language:

english

File:

PDF, 6.35 MB

english, 2015

50

Quantum mechanical study of the β- and δ-lyase reactions during the base excision repair process: application to FPG

Sowlati-Hashjin, Shahin, Wetmore, Stacey D.

Journal:

Physical Chemistry Chemical Physics

Year:

2015

Language:

english

File:

PDF, 2.96 MB

english, 2015

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